Fix retaining disabled ROM apps through module updates in some scenarios

- KernelSU or APatch have completely hidden directories/files so would not get recreated
- for .apk files with a config.xml the config.xml would not get recreated due to the 0-size/hidden .apk

module/customize.sh

@@ -3,6 +3,12 @@ if [ "$API" -lt 26 ]; then
     abort "! You can't use this module on Android < 8.0"
 fi
 
+# Copy any disabled app files to updated module
+if [ -d "/data/adb/modules/playintegrityfix/system" ]; then
+    ui_print "- Restoring disabled ROM apps configuration"
+    cp -arf /data/adb/modules/playintegrityfix/system $MODPATH
+fi
+
 # Copy any supported custom files to updated module
 for FILE in custom.app_replace.list custom.pif.json; do
     if [ -f "/data/adb/modules/playintegrityfix/$FILE" ]; then